PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla012711
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 187aa    MW: 21443.6 Da    PI: 10.1398
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla012711genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-18654153
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkl 53
               ++++GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a+  +
  Cla012711  6 KKFRGVRQRR-WGSWVSEIRHP-----LlkRRVWLGTFETAEDAARAYDEAAVLM 54
               59*****998.**********8.....334*********************9765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.75E-31666No hitNo description
SMARTSM003801.2E-37770IPR001471AP2/ERF domain
PROSITE profilePS5103221.694764IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-20766IPR016177DNA-binding domain
PfamPF008473.2E-11751IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-32765IPR001471AP2/ERF domain
PRINTSPR003671.7E-10819IPR001471AP2/ERF domain
PRINTSPR003671.7E-103046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MAKQQKKFRG VRQRRWGSWV SEIRHPLLKR RVWLGTFETA EDAARAYDEA AVLMSGRTAK  60
TNFPMSTALV QNDARNIPPF SSLSTILNTK LRKCWKSFPP SLTCLRLDAE SCRIGVWQRR  120
AGRCRVVDSN WVMMVELEKK KNDGFQVTDE SPKKGAEDQV RLSDGAESLD EEERAALQMI  180
EELLNKI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-17465264ATERF1
3gcc_A6e-17465264ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818741e-71LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBankLN7132611e-71LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008454492.11e-107PREDICTED: ethylene-responsive transcription factor WIN1-like
SwissprotQ9XI335e-61WIN1_ARATH; Ethylene-responsive transcription factor WIN1
TrEMBLA0A0A0KWT01e-103A0A0A0KWT0_CUCSA; Uncharacterized protein
STRINGGLYMA08G22590.17e-67(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57633144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15360.13e-52ERF family protein